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Self-incompatibility in plants
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Everything about Self-incompatibility In Plants totally explained

Self-incompatibility (SI) is a general name for several genetic mechanisms in angiosperms, which prevent self-fertilization and thus encourage outcrossing. In plants with SI, when a pollen grain produced in a plant reaches a stigma of the same plant or another plant with a similar genotype, the process of pollen germination, pollen tube growth, ovule fertilization, and embryo development is halted at one of its stages, and consequently no seeds are produced. SI is one of the most important means to prevent selfing and promote the generation of new genotypes in plants, and it's considered as one of the causes for the spread and success of the angiosperms on our planet.

Mechanisms of self-incompatibility

The best studied mechanisms of SI act by inhibiting the germination of pollen on stigmas, or the elongation of the pollen tube in the styles. These mechanisms are based on protein-protein interactions, each mechanism being controlled by a single locus termed S, which has many different alleles in the species population. Despite their similar morphological and genetic manifestations, these mechanisms have evolved independently, and are based on different cellular components; therefore, each mechanism has its own, unique S-locus.
   The S-locus contains two basic SI genes - one expressed in the pistil, and the other in the anther and/or pollen (referred to as the female and male determinants, respectively). Because of their physical proximity, these genes are genetically linked, and are inherited as a unit. Variants of the S-locus are called S-haplotypes. The translation products of the two genes of the S-locus are two proteins which, by interacting with one another, lead to the arrest of pollen germination and/or pollen tube elongation, and thereby generate an SI response, preventing fertilization. However, when a female determinant interacts with a male determinant of a different allele, no SI is created, and fertilization ensues. This is a simplistic description of the general mechanism of SI, which is more complicated, and in some species the S-locus contains more than two genes.
   Following is a detailed description of the different known mechanisms of SI in plants.

Gametophytic self-incompatibility (GSI)

In gametophytic self-incompatibility (GSI), the SI phenotype of the pollen is determined by its own gametophytic haploid genotype. This is the more common type of SI, existing in the families: Solanaceae, Rosaceae, Scrophulariaceae, Fabaceae, Onagraceae, Campanulaceae, Papaveraceae and Poaceae. Two different mechanisms of GSI have been described in detail at the molecular level, and their description follows.

The RNase mechanism

The female component of GSI in the Solanaceae was found in 1989. Proteins in the same family were subsequently discovered in the Rosaceae and Scrophulariaceae. Despite some early doubts about the common ancestry of GSI in these distantly related families, phylogenetic studies and the finding of shared male determinants (F-box proteins) clearly established homology. Consequently, this mechanism arose approximately 90 million years ago, and is the inferred ancestral for approximately 50% of all plants.
   In this mechanism, pollen tube elongation is halted when it has proceeded approximately one third of the way through the style. The female component ribonuclease, termed S-RNase The influx of calcium ions arrests tube elongation within 1-2 minutes. At this stage, pollen inhibition is still reversible, and elongation can be resumed by applying certain manipulations, resulting in ovule fertilization. possibly resulting in arrest of synthesis of molecular building blocks, required for tube elongation. There is depolymerization and reorganization of actin filaments, within the pollen cytoskeleton. Within 10 minutes from the placement on the stigma, the pollen is committed to a process which ends in its death. At 3-4 hours past pollination, fragmentation of pollen DNA begins, and finally (at 10-14 hours), the cell dies apoptotically.

Sporophytic self-incompatibility (SSI)

In sporophytic self-incompatibility (SSI), the SI phenotype of the pollen is determined by the diploid genotype of the anther (the sporophyte) in which it was created. This form of SI was identified in the families: Brassicaceae, Asteraceae, Convolvulaceae, Betulaceae, Caryophyllaceae, Sterculiaceae and Polemoniaceae. Up to this day, only one mechanism of SSI has been described in detail at the molecular level, in Brassica (Brassicaceae).
   Since SSI is determined by a diploid genotype, the pollen and pistil each express the translation products of two different alleles, for example two male and two female determinants. Dominance relationships often exist between pairs of alleles, resulting in complicated patterns of compatibility/self-incompatibility. These dominance relationships also allow the generation of individuals homozygous for a recessive S allele.
   Compared to a population in which al S alleles are co-dominant, the presence of dominance relationships in the population, raises the chances of compatible mating between individuals.

The SI mechanism in Brassica

As previously mentioned, the SI phenotype of the pollen is determined by the diploid genotype of the anther. In Brassica, the pollen coat, derived from the anther's tapetum tissue, carries the translation products of the two S alleles. These are small, cysteine-rich proteins. The gene encoding these proteins is termed SCR or SP11, and is expressed in the anther tapetum (for example sporophytically), as well as in the microspore and pollen (for example gametophytically).
   The female determinant of the SI response in Brassica, is a transmembrane protein termed SRK, which has an intracellular kinase domain, and a variable extracellular domain. SRK is expressed in the stigma, and probably functions as a receptor for the SCR/SP11 protein in the pollen coat. Another stigmatic protein, termed SLG, is highly similar in sequence to the SRK protein, and seems to function as a co-receptor for the male determinant, amplifying the SI response.
   The interaction between the SRK and SCR/SP11 proteins results in autophosphorylation of the intracellular kinase domain of SRK, and a signal is transmitted into the cell of the stigma. Another protein essential for the SI response is MLPK, a serine-threonine kinase, which is anchored to the plasma membrane from its intracellular side. The downstream cellular and molecular events, leading eventually to pollen inhibition, are poorly described.

Other mechanisms of self-incompatibility

These mechanisms are less abundant and have received only limited attention in scientific research. Therefore, they're still poorly understood.

Heteromorphic self-incompatibility

A distinct SI mechanism exists in heterostylous flowers, termed heteromorphic self-incompatibility. This mechanism is probably not evolutionarily related to the more familiar mechanisms, which are differentially defined as homomorphic self-incompatibility.
   Almost all heterostylous taxa feature SI to some extent. The loci responsible for SI in heterostylous flowers, are strongly linked to the loci responsible for flower polymorphism, and these traits are inherited together. Distyly is determined by a single locus, which has two alleles; tristyly is determined by two loci, each with two alleles. Heteromorphic SI is sporophytic, for example both alleles in the male plant, determine the SI response in the pollen. SI loci always contain only two alleles in the population, one of which is dominant over the other, in both pollen and pistil. Variance in SI alleles parallels the variance in flower morphs, thus pollen from one morph can fertilize only pistils from the other morph. In tristylous flowers, each flower contains two types of stamens; each stamen produces pollen capable of fertilizing only one flower morph, out of the three existing morphs. Tristylous plants contain, in addition to the S locus, the M locus, also with two alleles.

Cryptic self-incompatibility (CSI)

Cryptic self-incompatibility (CSI) exists in a limited number of taxa (for example, there's evidence for CSI in Silene vulgaris, Caryophyllaceae). In this mechanism, the simultaneous presence of cross and self pollen on the same stigma, results in higher seed set from cross pollen, relative to self pollen. However, as opposed to 'complete' or 'absolute' SI, in CSI, self-pollination without the presence of competing cross pollen, results in successive fertilization and seed set;

Late-acting self-incompatibility (LSI)

Late-acting self-incompatibility (LSI) is also termed ovarian self-incompatibility (OSI). In this mechanism, self pollen germinates and reaches the ovules, but no fruit is set. LSI can be pre-zygotic (for example deterioration of the embryo sac prior to pollen tube entry, as in Narcissus triandrus) or post-zygotic (malformation of the zygote or embryo, as in certain species of Asclepias and in Spathodea campanulata).
   The existence of the LSI mechanism among different taxa and in general, is subject for scientific debate. Criticizers claim, that absence of fruit set is due to genetic defects (homozygosity for lethal recessive alleles), which are the direct result of self-fertilization (inbreeding depression). Supporters, on the other hand, argue for the existence of several basic criteria, which differentiate certain cases of LSI from the inbreeding depression phenomenon. Pollinator decline, variability in pollinator service, and life history traits that are associated with weediness, among other factors, may favor the loss of SI. As a result, mutations that break down SI (result in SC) may become common or entirely dominate in natural populations. Similarly, human-mediated artificial selection through selective breeding may be responsible for the commonly observed self-compatibility in cultivated plants. SC enables more efficient breeding techniques to be employed for crop improvement.

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